Detection of SARS-CoV-2 in Environment: Current Surveillance and Effective Data Management of COVID-19 DOI

Sh. Nadzirah,

Noraziah Mohamad Zin,

Arif Khalid

et al.

Critical Reviews in Analytical Chemistry, Journal Year: 2023, Volume and Issue: 54(8), P. 3083 - 3094

Published: June 26, 2023

Since diagnostic laboratories handle large COVID-19 samples, researchers have established laboratory-based assays and developed biosensor prototypes. Both share the same purpose; to ascertain occurrence of air surface contaminations by SARS-CoV-2 virus. However, biosensors further utilize internet-of-things (IoT) technology monitor virus contamination, specifically in laboratory setting. The IoT-capable great potential for possible contamination. Numerous studies been done on contamination hospital Through reviews, there are abundant reports viral transmission through droplet infections, person-to-person close contact fecal-oral transmission. environmental conditions need be better reported. Therefore, this review covers detection airborne wastewater samples using with comprehensive methods techniques sampling sensing (2020 until 2023). Furthermore, exposes cases public health settings. Then, integration data management together is well explained. Last, ended challenges having a practical applied surveillance samples.

Language: Английский

Recent progress on wastewater-based epidemiology for COVID-19 surveillance: A systematic review of analytical procedures and epidemiological modeling DOI Open Access
Stéfano Ciannella, Cristina González-Fernández, Jenifer Gómez‐Pastora

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 878, P. 162953 - 162953

Published: March 21, 2023

Language: Английский

Citations

60
Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond DOI
Michael D. Parkins,

Bonita E. Lee,

Nicole Acosta

et al.

Clinical Microbiology Reviews, Journal Year: 2023, Volume and Issue: 37(1)

Published: Dec. 14, 2023

SUMMARY Wastewater-based surveillance (WBS) has undergone dramatic advancement in the context of coronavirus disease 2019 (COVID-19) pandemic. The power and potential this platform technology were rapidly realized when it became evident that not only did WBS-measured SARS-CoV-2 RNA correlate strongly with COVID-19 clinical within monitored populations but also, fact, functioned as a leading indicator. Teams from across globe innovated novel approaches by which wastewater could be collected diverse sewersheds ranging treatment plants (enabling community-level surveillance) to more granular locations including individual neighborhoods high-risk buildings such long-term care facilities (LTCF). Efficient processes enabled extraction concentration highly dilute matrix. Molecular genomic tools identify, quantify, characterize its various variants adapted programs applied these mixed environmental systems. Novel data-sharing allowed information mobilized made immediately available public health government decision-makers even public, enabling evidence-informed decision-making based on local dynamics. WBS since been recognized tool transformative potential, providing near-real-time cost-effective, objective, comprehensive, inclusive data changing prevalence measured analytes space time populations. However, consequence rapid innovation hundreds teams simultaneously, tremendous heterogeneity currently exists literature. This manuscript provides state-of-the-art review established details current work underway expanding scope other infectious targets.

Language: Английский

Citations

52
Moving forward with COVID-19: Future research prospects of wastewater-based epidemiology methodologies and applications DOI Open Access
Guangming Jiang, Yanchen Liu, Song Tang

et al.

Current Opinion in Environmental Science & Health, Journal Year: 2023, Volume and Issue: 33, P. 100458 - 100458

Published: March 7, 2023

Language: Английский

Citations

29
Multiplexed discrimination of SARS-CoV-2 variants via plasmonic-enhanced fluorescence in a portable and automated device DOI
Ying Liu, Yang Yang, Guanghui Wang

et al.

Nature Biomedical Engineering, Journal Year: 2023, Volume and Issue: 7(12), P. 1636 - 1648

Published: Sept. 21, 2023

Language: Английский

Citations

27
Adapted methods for monitoring influenza virus and respiratory syncytial virus in sludge and wastewater DOI Creative Commons
Daniel Toribio-Avedillo, Clara Gómez-Gómez, Laura Sala‐Comorera

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 918, P. 170636 - 170636

Published: Feb. 6, 2024

Wastewater-based surveillance constitutes a valuable methodology for the continuous monitoring of viral circulation, with capacity to function as an early warning system. It holds particular significance in scenarios where respiratory viruses exhibit overlapping clinical presentations, occurs SARS-CoV-2, influenza virus (IV), and syncytial (RSV), allows seasonal outbreaks be distinguished from COVID-19 peaks. Furthermore, sewage sludge, given it harbors concentrated human waste large population, serves substantial reservoir pathogen detection. To effectively integrate wastewater-based epidemiology into infectious disease surveillance, detection methods employed wastewater samples must adapted distinct characteristics sludge matrices. In this study, we applied protocols IV RSV comparing their performance results obtained wastewater. assess efficiency these protocols, were spiked RNA, either free or incorporated lentiviral particles. Samples using aluminum hydroxide adsorption-precipitation method before RNA extraction. Absolute quantification was carried out by RT-qPCR, including internal control monitor potential inhibitory factors. Recovery efficiencies both 60 % 75 71 respectively wastewater, whereas values particles 16 10 21 17 respectively. Additionally, protocol enabled naturally occurring collected two treatment plants during winter months, thus affirming efficacy methodologies.

Language: Английский

Citations

6
Preconcentration and detection of SARS-CoV-2 in wastewater: A comprehensive review DOI
Yihan Yang, Jisui Tan, F. Wang

et al.

Biosensors and Bioelectronics, Journal Year: 2024, Volume and Issue: 263, P. 116617 - 116617

Published: July 30, 2024

Language: Английский

Citations

4
SARS-CoV-2 surveillance in medical and industrial wastewater—a global perspective: a narrative review DOI Open Access
Kaiwen Yang, Jinlin Guo, Michelle Møhlenberg

et al.

Environmental Science and Pollution Research, Journal Year: 2023, Volume and Issue: 30(23), P. 63323 - 63334

Published: March 29, 2023

Language: Английский

Citations

9
A Portable Nucleic Acid Testing Platform with Photosensitization, a Three-Dimensionally Printed Multipiece Chip, and Digital Color Sensing DOI
Tianyu Dong,

Ruolin Ding,

Rongxing Zhou

et al.

Analytical Chemistry, Journal Year: 2024, Volume and Issue: 96(17), P. 6628 - 6633

Published: April 16, 2024

Portable nucleic acid testing (NAT) holds great promise for point-of-care disease diagnosis and field-based applications but remains difficult to achieve. Herein, we describe a portable NAT that streamlines loop-mediated isothermal amplification with photosensitization-based color development in fully sealed 3D-printed multipiece chip. Using smartphone accessory an APP, also introduce calibration-free quantification approach via digital sensing library matching. With these innovative approaches, our detection platform is highly accessible, allowing rapid sensitive without requiring sophisticated instruments well-trained personnel. The field applicability of was demonstrated by detecting tuberculosis infections clinical sputum samples food adulteration commercial salmon meat products.

Language: Английский

Citations

3
Wastewater early warning system for SARS-CoV-2 outbreaks and variants in a Coruña, Spain DOI Creative Commons
Noelia Trigo‐Tasende, Juán A. Vallejo, Soraya Rumbo‐Feal

et al.

Environmental Science and Pollution Research, Journal Year: 2023, Volume and Issue: 30(32), P. 79315 - 79334

Published: June 7, 2023

Abstract Wastewater-based epidemiology has been widely used as a cost-effective method for tracking the COVID-19 pandemic at community level. Here we describe COVIDBENS, wastewater surveillance program running from June 2020 to March 2022 in treatment plant of Bens A Coruña (Spain). The main goal this work was provide an effective early warning tool based help decision-making both social and public health levels. RT-qPCR procedures Illumina sequencing were weekly monitor viral load detect SARS-CoV-2 mutations wastewater, respectively. In addition, own statistical models applied estimate real number infected people frequency each emerging variant circulating community, which considerable improved strategy. Our analysis detected 6 waves with concentrations between 10 3 RNA copies/L. system able anticipate outbreaks during 8–36 days advance respect clinical reports and, emergence new variants such Alpha (B.1.1.7), Delta (B.1.617.2), Omicron (B.1.1.529 BA.2) 42, 30, 27 days, respectively, before did. Data generated here helped local authorities managers give faster more efficient response situation, also allowed important industrial companies adapt their production situation. wastewater-based developed our metropolitan area (Spain) served powerful combining monitoring over time.

Language: Английский

Citations

9
Comparison of adsorption-extraction (AE) workflows for improved measurements of viral and bacterial nucleic acid in untreated wastewater DOI Creative Commons
Jesmin Akter, Wendy Smith, Yawen Liu

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 908, P. 167966 - 167966

Published: Oct. 28, 2023

The lack of standardized methods and large differences in virus concentration extraction workflows have hampered severe acute respiratory syndrome (SARS-CoV-2) wastewater surveillance data reporting practices. Numerous studies shown that adsorption-extraction (AE) method holds promise, yet several uncertainties remain regarding the optimal AE workflow. Several procedural components may influence recovered concentrations target DNA/RNA, including membrane types, homogenization instruments, speed duration, lysis buffer. In this study, 42 different varied these were compared to determine by quantifying endogenous SARS-CoV-2, human adenovirus (HAdV 40/41) a bacterial marker gene fecal pollution (Bacteroides HF183). Our findings suggest certain selected workflow had significant impact on SARS-CoV-2 concentrations, whereas it minimal HF183 no effect HAdV 40/41 concentrations. When comparing individual workflow, such as type (MF-Millipore™ 0.45 μm MCE vs. Isopore™ 0.40 μm) instruments (Precellys 24 homogenizer Vortex-Genie®-2), we found they 40/41, This suggests at least some consumables equipment are interchangeable. Buffer PM1 + TRIzol based yielded higher than other workflows. without chloroform. Similarly, speeds (5000-10,000 rpm) led increased but 40/41. indicate minor enhancements can improve recovery viruses bacteria from wastewater, leading outcomes efforts.

Language: Английский

Citations

9